PBIO / BIOL  4550 / 6550

Bioinformatics Applications

Spring Semester 2006, 3 credits

Schedule:
  • Lecture: Normally, two 75 minute lectures per week, 9:30 AM, Tuesdays and Thursdays, room 1501, Plant Sciences.
  • Lab: We will have a lab session every-other-Thursday at the normal class time, although this may change depending upon enrollment.
1 Tue 8 Jan Introduction Russell L. Malmberg
2 Thr 10 Jan Unix, Linux, Command-Line Russell L. Malmberg
3 Tue 15 Jan Local Resources Yecheng Huang
4 Thr 17 Jan Lab TA - Haibao Tang
5 Tue 22 Jan NCBI, Blast, & Other Databases Russell L. Malmberg
6 Thr 24 Jan File Formats, HTML Russell L. Malmberg
7 Tue 29 Jan XML, Ontologies, Databases Russell L. Malmberg
8 Thr 31 Jan Lab TA - Haibao Tang
9 Tue 5 Feb Alignments - Scoring Matrices, Two Sequences Russell L. Malmberg
10 Thr 7 Feb Alignments - Two & Multiple Sequences Russell L. Malmberg
11 Tue 12 Feb Alignments - Multiple Sequences Russell L. Malmberg
12 Thr 14 Feb Lab TA - Haibao Tang
13 Tue 19 Feb Probabilities, Entropy -- PS1 distributed Russell L. Malmberg
14 Thr 21 Feb Motifs & Profiles Russell L. Malmberg
15 Tue 26 Feb Sequence Assembly, Gene Prediction Russell L. Malmberg
16 Thr 28 Feb Lab -- PS 1 due TA - Haibao Tang
17 Tue 4 Mar Gene Prediction Russell L. Malmberg
18 Thr 6 Mar Phylogenetic Trees Russell L. Malmberg
  Tue 11 Mar Spring Break
  Thr 13 Mar Spring Break
19 Tue 18 Mar Phylogenetic Trees Russell L. Malmberg
20 Thr 20 Mar Lab TA - Haibao Tang
21 Tue 25 Mar Scripting Russell L. Malmberg
22 Thr 27 Mar Scripting Russell L. Malmberg
23 Tue 1 Apr Database Reports Graduate Students
24 Thr 3 Apr Lab TA - Haibao Tang
25 Tue 8 Apr Database Reports Graduate Students
26 Thr 10 Apr RNA Structure Prediction Russell L. Malmberg
27 Tue 15 Apr Protein Structure Prediction Russell L. Malmberg
28 Thr 17 Apr Lab TA - Haibao Tang
29 Tue 22 Apr Microarrays Russell L. Malmberg
30 Thr 24 Apr Genomes, Systems Biology -- PS2 distributed Russell L. Malmberg
PS2 Tue 6 May PS2 due 11:00 AM.